Renders each chain in the structure in a different color. Standard amino acid residue, AGX, or GLX (including nucleotides, solvents, and non-amino ligands). (for a total of 22 colors for amino acids) along with one additional color for anything that is not a Renders each of the 20 standard amino acid residues as well as ASX and GLX in a different color The element color is overridden when another color scheme is applied, such as 'STRUCTURE' or 'CHAIN' but the altered color persists as the default color when 'CPK' is used.ĪMINO, CHAIN, CPK, FIXEDTEMPERATURE, FORMALCHARGE, GROUP, MONOMER, PARTIALCHARGE, RELATIVETEMPERATURE, SHAPELY, and STRUCTURE Altering the element color occurs independently of the currently selected atom set. Changes in chemical element colors persist for the life of the applet or application (regardless of loading a subsequent model) until they are reset using the 'set defaultColors' command. Available in PreReleases of Jmol 10 only not available in Jmol 10.00.00. Which colors hydrogen bonds in a biomolecule based on the number of residues between the atoms participating in the bond.ĤAlters the default color of the named element. In Jmol 10.00.00, labels could not be colored using color schemes.Ģ Available in PreReleases only not available in Jmol 10.00.00.ģ HBONDS has an additional color option, TYPE, With the background command, as in background LABELS NONE it means 'remove completely.'ġ Applying color schemes to labels became available in Jmol PreRelease 10.00.39.In the context of coloring model objects such as HOVER and AXES, it means 'black.'.In the context of coloring bond objects and atom objects other than ATOMS itself, (for example, color BONDS NONE or color RIBBONS NONE), it means 'not specified: return to the state of inheriting the color of the associated atom,' which might not be the default color.In the context of color ATOMS NONE or just color NONE, it means 'not specified: revert to the default coloring scheme' (either Jmol or Rasmol, depending upon the setting of set defaultColors), which might have been modified using the color command.In Jmol the option NONE can have one of four different meanings, depending upon the context: Biomolecular displays, such as ribbons, traces, and cartoons, are rendered by default in the color of alpha carbon atoms for proteins and the phosphorus atoms for nucleic acids. The color name or value can be preceeded by the modifiers TRANSLUCENT or OPAQUE to add additional visible character to the colored object. In Jmol can be either a color name, such as 'green', or a color value placed in square brackets, expressed as either red-green-blue color triplets, for example, or as one hexidecimal number preceded by the letter x, for example.

Color code jmol helix seet